PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5428_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 544aa    MW: 60330.8 Da    PI: 9.1918
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5428_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.3e-05115137123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C++C+k F r  nL+ H r H
  Neem_5428_f_1 115 FICEICNKGFQRDQNLQLHRRGH 137
                    89*******************88 PP

2zf-C2H212.60.00041191213123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k +  +s+ k H +t+
  Neem_5428_f_1 191 WKCEKCSKKYAVQSDWKAHSKTC 213
                    58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.51E-7114137No hitNo description
Gene3DG3DSA:3.30.160.601.5E-5114137IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.845115137IPR007087Zinc finger, C2H2
SMARTSM003550.022115137IPR015880Zinc finger, C2H2-like
PfamPF121716.6E-5115137IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
SMARTSM00355100156186IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-4179212IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.51E-7186211No hitNo description
SMARTSM00355140191211IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010075Biological Processregulation of meristem growth
GO:0045604Biological Processregulation of epidermal cell differentiation
GO:0048364Biological Processroot development
GO:0051302Biological Processregulation of cell division
GO:0003676Molecular Functionnucleic acid binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MYLCISKHML RSTRSMHADT YSQYSSSVVV DETCLEVRWG REDEAKQSNF LKGWSIDPAN  60
LVPLSRQSTR SVRRQYLFDT GVDHRVINDI CVENAYPDAE VIALSPKTLM ATNRFICEIC  120
NKGFQRDQNL QLHRRGHNLP WKLRQRTNKE IKKKVYICPE KTCVHHDPSR ALGDLTGIKK  180
HFSRKHGEKK WKCEKCSKKY AVQSDWKAHS KTCGTREYKC DCGTLFSRKD SFITHRAFCD  240
ALAEESARLT SVAAANLNFR NDTVNLPHGF PNQGLQDVSG VPQFGSGFRP DLAAAEFTVS  300
LPEMVQMASG NLLGSSSNMA NFGSHNQFQG FDRSVTTSSK CANLSLSATP QGLKEESSSL  360
YSDTQNKKSK PATPMSATAL LQKAAQMGST RSNPSIFGNS FNVMSSSSSN TSNFNSLHQN  420
RNELHQVFQN VRQQENFAGT VTLAMSDGVM GGSNLSSMNT TTTATATTSS TLNQLIMQTR  480
GEQNDQVQLK LHPCSNSIEH SLTRDFLGMS GDQSGRLFLP QELAKFASIG SVSTMGLSQF  540
TSNH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00485DAPTransfer from AT5G03150Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027297.10.0C2H2-like zinc finger protein, putative
SwissprotQ700D21e-134IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLA0A061EZX00.0A0A061EZX0_THECC; C2H2-like zinc finger protein, putative
STRINGVIT_08s0040g02100.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-119C2H2-like zinc finger protein